PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G12870.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 455aa    MW: 49457.6 Da    PI: 6.0763
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G12870.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.46.3e-30693178
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavg 78
                     +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ +          p +++ da+sslvyeA+ r+rdPvyG+vg
  ONIVA08G12870.2  6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCVG 93
                     7*********************************************976555555555588899**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6465116IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-30693IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL  60
PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA  120
ARCSTAMATR TRRMTTQRKI LGYATGCHLP SPLVPRSAGP CSGFPSIVGS EGVLREGGAG  180
MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP SGEEQKGENK ANAFGKDEKP  240
TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI DDTLEHREEG VAEVDMQDKL  300
TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV GRIVISNSPN GNQDLLLDLK  360
GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV EGTLDGFTFD SDEEGDKLPE  420
PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0593400.0AK059340.1 Oryza sativa Japonica Group cDNA clone:001-026-B04, full insert sequence.
GenBankAK2431990.0AK243199.1 Oryza sativa Japonica Group cDNA, clone: J100040F14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626349.11e-169PREDICTED: DNA-binding protein BIN4 isoform X3
TrEMBLA0A0E0IAU60.0A0A0E0IAU6_ORYNI; Uncharacterized protein
STRINGBGIOSGA000185-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.17e-42LBD family protein